FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51597308
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCAGTCTACTGCTCCAGTCTTGCCTGCACCAACCACAACCGCTTCAAC4242150.8221649858167019No Hit
CCTGGATATGGAGTACTTCGGCACTATCGGCATCGGAACTCCTGCCCAGG2847180.5518078578828183No Hit
CGGAACTCCTGCCCAGGATTTCACCGTCGTCTTTGACACCGGCTCCTCCA2316610.4489788498268165No Hit
CAACCACAACCGCTTCAACCCTGAGGATTCTTCCACCTACCAGTCCACCA1578920.3060082126765218No Hit
CCGGCTCCTCCAACCTGTGGGTGCCCTCAGTCTACTGCTCCAGTCTTGCC1460640.2830845361157214No Hit
CTCAGTCTACTGCTCCAGTCTTGCCTGCACCAACCACAACCGCTTCAACC1443540.2797704097275773No Hit
CTTTGACACCGGCTCCTCCAACCTGTGGGTGCCCTCAGTCTACTGCTCCA1397740.2708939776470509No Hit
CCAGAGTGGCAGCGTGGTGATCTTTGGTGGCATTGACTCTTCTTACTACA1284700.24898585794437184No Hit
TGAACAGCCCCTGGAGAACTACCTGGATATGGAGTACTTCGGCACTATCG1262310.24464648427007085No Hit
CAGGATTTCACCGTCGTCTTTGACACCGGCTCCTCCAACCTGTGGGTGCC1262050.24459609404428617No Hit
CTTCACCATCAATGGAGTCCAGTACCCCGTGCCACCCAGTGCCTACATCC1221840.23680305181812975No Hit
CTTCCACCTACCAGTCCACCAGCGAGACAGTCTCCATCACCTACGGCACC1209950.23449866803128566No Hit
CTTGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGC1175540.22782971545724828No Hit
CTCCCACCCTGGTAGATGAACAGCCCCTGGAGAACTACCTGGATATGGAG1171820.22710874761140637No Hit
CTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTG1126760.21837573386580558No Hit
CTGGATATGGAGTACTTCGGCACTATCGGCATCGGAACTCCTGCCCAGGA1093380.21190640410929965No Hit
CCAGTGCCTACATCCTGCAGAGCGAGGGGAGCTGCATCAGTGGCTTCCAG1077750.2088771763053995No Hit
CGGAACTCCTGCCCAGGATTTCACTGTCCTCTTTGACACCGGCTCCTCCA1071230.20761354448956912No Hit
CTCCTGCCCAGGATTTCACCGTCGTCTTTGACACCGGCTCCTCCAACCTG1046810.20288073943702645No Hit
CTTTGGTGGCATTGACTCTTCTTACTACACTGGAAGTCTGAACTGGGTGC1028290.19929140489267386No Hit
CTTCGGCACTATCGGCATCGGAACTCCTGCCCAGGATTTCACCGTCGTCT1005010.1947795415993408No Hit
TGGAGAACTACCTGGATATGGAGTACTTCGGCACTATCGGCATCGGAACT965570.1871357319649312No Hit
GTCGTCTTTGACACCGGCTCCTCCAACCTGTGGGTGCCCTCAGTCTACTG962330.18650779222823022No Hit
CCCCGTGCCACCCAGTGCCTACATCCTGCAGAGCGAGGGGAGCTGCATCA957350.1855426255958935No Hit
GGAGTACTTCGGCACTATCGGCATCGGAACTCCTGCCCAGGATTTCACCG951000.18431194123538383No Hit
CTCAGATGGCGACATGGTGGTCAGCTGCTCAGCCATCAGCAGCCTGCCCG950350.1841859656709222No Hit
CTCCAGTCTTGCCTGCACCAACCACAACCGCTTCAACCCTGAGGATTCTT939210.18202693830461075No Hit
TTTCACCGTCGTCTTTGACACCGGCTCCTCCAACCTGTGGGTGCCCTCAG896490.17374743659107178No Hit
CAGCAGCCTGCCCGACATCGTCTTCACCATCAATGGAGTCCAGTACCCCG884480.17141979577694247No Hit
CGGCATCGGAACTCCTGCCCAGGATTTCACCGTCGTCTTTGACACCGGCT879080.1703732295491075No Hit
GTCCTTGAGGCGCACCCTGTCCGAGCGTGGCCTGCTGAAGGACTTCCTGA862800.16721802618074572No Hit
GTCCAGTACCCCGTGCCACCCAGTGCCTACATCCTGCAGAGCGAGGGGAG861150.1668982420555739No Hit
CGACATCGTCTTCACCATCAATGGAGTCCAGTACCCCGTGCCACCCAGTG851400.16500860858864963No Hit
CTGAACTGGGTGCCTGTTACCGTCGAGGGTTACTGGCAGATCACCGTGGA814700.1578958344105859No Hit
CATGTACAAGGTCCCCCTCATCAGAAAGAAGTCCTTGAGGCGCACCCTGT797700.15460108887851282No Hit
GGCTCCTCCAACCTGTGGGTGCCCTCAGTCTACTGCTCCAGTCTTGCCTG778480.15087608834166308No Hit
CATCAATGGAGTCCAGTACCCCGTGCCACCCAGTGCCTACATCCTGCAGA767420.14873256566020848No Hit
CGAGAACTCAGATGGCGACATGGTGGTCAGCTGCTCAGCCATCAGCAGCC754960.1463177109937596No Hit
GTCTTCACCATCAATGGAGTCCAGTACCCCGTGCCACCCAGTGCCTACAT722510.14002862319871417No Hit
CTTCGGCCTGAGCGAGACGGAACCTGGCTCCTTCCTGTATTATGCTCCCT718500.13925145087026633No Hit
CAGAGTGGCAGCGTGGTGATCTTTGGTGGCATTGACTCTTCTTACTACAC711220.1378405245482962No Hit
CTCCAACCTGTGGGTGCCCTCAGTCTACTGCTCCAGTCTTGCCTGCACCA703070.1362609847785082No Hit
CTGGAAGTCTGAACTGGGTGCCTGTTACCGTCGAGGGTTACTGGCAGATC685680.13289065390775814No Hit
CTGCTCCAGTCTTGCCTGCACCAACCACAACCGCTTCAACCCTGAGGATT685580.1328712730516871No Hit
GTACAAGGTCCCCCTCATCAGAAAGAAGTCCTTGAGGCGCACCCTGTCCG678020.13140608033271814No Hit
CCGACATCGTCTTCACCATCAATGGAGTCCAGTACCCCGTGCCACCCAGT664400.12876640773584544No Hit
CGACACTGTCCAGGTTGGAGGCATCTCTGACACCAATCAGATCTTCGGCC661890.1282799482484629No Hit
TCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTGCT661390.12818304396810778No Hit
CTGGGTGCCTGTTACCGTCGAGGGTTACTGGCAGATCACCGTGGACAGCA650610.12609378768365204No Hit
CTTCTCTGTCTACCTCAGCGCCGATGACCAGAGTGGCAGCGTGGTGATCT637720.12359559533609776No Hit
TTTCACTGTCCTCTTTGACACCGGCTCCTCCAACCTGTGGGTGCCCTCAG628380.12178542337906466No Hit
CATGAAGTGGCTGCTGCTGCTGGGTCTGGTGGCGCTCTCTGAGTGCATCA627000.1215179675652846No Hit
CTGGTTTCTCAGGACCTCTTCTCTGTCTACCTCAGCGCCGATGACCAGAG586090.11358925934663103No Hit
CGGAACCTGGCTCCTTCCTGTATTATGCTCCCTTCGATGGCATCCTGGGG577410.11190700103966664No Hit
GGAGAACTACCTGGATATGGAGTACTTCGGCACTATCGGCATCGGAACTC564350.10937586123679166No Hit
CCACAACCGCTTCAACCCTGAGGATTCTTCCACCTACCAGTCCACCAGCG563830.10927508078522237No Hit
CCCTGTCCGAGCGTGGCCTGCTGAAGGACTTCCTGAAGAAGCACAACCTC559120.1083622424642774No Hit
GGAAGAACCATGAAGTGGCTGCTGCTGCTGGGTCTGGTGGCGCTCTCTGA551090.10680595972177463No Hit
CTGGAACCAGGGCCTGGTTTCTCAGGACCTCTTCTCTGTCTACCTCAGCG548870.10637570471699802No Hit
CTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTGCTGGGTC539170.10449576167810926No Hit
CCCGTGCCACCCAGTGCCTACATCCTGCAGAGCGAGGGGAGCTGCATCAG536550.10398798324904857No Hit
GTCTTGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCT535700.10382324597244491No Hit
GAACTACCTGGATATGGAGTACTTCGGCACTATCGGCATCGGAACTCCTG527920.1023154153701197No Hit
ATCGTCTTCACCATCAATGGAGTCCAGTACCCCGTGCCACCCAGTGCCTA524300.10161382838034883No Hit
CAGGATTTCACTGTCCTCTTTGACACCGGCTCCTCCAACCTGTGGGTGCC516320.10006723606588157No Hit
CCTGCCCAGGATTTCACCGTCGTCTTTGACACCGGCTCCTCCAACCTGTG516300.10006335989466736No Hit
GTCTTGCCTGCACCAACCACAACCGCTTCAACCCTGAGGATTCTTCCACC516270.10005754563784607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)