FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176026624
Total Bases13.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA3935400.22356845291766772No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC2624720.14910926201709124No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA2102120.11942057128812515No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)