FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57796164
Total Bases4.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA4130890.7147342858256129No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC2216380.3834821978842748No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC1487000.257283511064852No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC1056610.1828166312214077No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG1051630.18195498234104257No Hit
CTCTGCTCTTCTCCAGAAGGCACCACCACAGCTGCCCACTTCTGGAAGGT798830.13821505524138245No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG739810.12800330485601086No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT709330.12272959845570375No Hit
CCACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAA582170.10072813828959305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)