FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences207231988
Total Bases15.7 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGTTTTCACAGCTTCGCCATTCTGGCGGGTCCAGGAGATGGTCACGC3354220.1618582165992636No Hit
GTGAGAGTGAAATCTGTCCCAGATCCACTGCCGCTGAACCTTGATGGGAC3168380.152890489088007No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG2580180.12450684013126391No Hit
CCGACAAGTGATGGTGACTGTGTCTCCTACAGATGCAGACAGTGAGGATG2218950.107075650888414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)