FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences167929262
Total Bases12.7 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG3074600.18308899612742893No Hit
CCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGC2696100.16054974385583853No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA2185930.13016969014012578No Hit
CTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCA1958210.11660921846961966No Hit
CTCAGGACAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC1729770.10300587160324685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)