FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences150895460
Total Bases11.4 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA2251690.14922185200270438No Hit
CTTGAACAGCCTGACTCCTGCCAGCCCTATGGAAGTTCCTTTTATGCATT1984070.13148639462048758No Hit
GTTGTCTTGAACAGCCTGACTCCTGCCAGCCCTATGGAAGTTCCTTTTAT1918840.12716353427730695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)