FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008411091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008411091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences194184367
Total Bases14.7 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC14065370.7243307078370527No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10179760.5242316957471659No Hit
CCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACACA9708690.4999727913215589No Hit
GCCCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACA8928100.459774395742166No Hit
CCCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACAC8112800.4177885236250764No Hit
CTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTT7821480.4027862860865623No Hit
CTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATGTCGCTGGGGTAGA5169810.2662320391630702No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA5082840.2617533058158075No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG4910650.2528859596612121No Hit
CCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTC4742880.24424623224175404No Hit
CCCTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTC4516170.23257124503745452No Hit
CTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCCC4413380.22727782200922486No Hit
CTCCGCCTCTTGGGTTTGCGTGACGGTTCCACGTCACCGACCCTCCGCCT3903280.20100897205592252No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC3658770.1884173302169067No Hit
CCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTAACACTCGGGGGGG3340740.17203959575180428No Hit
GGCCCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACAC3165180.1629987031860294No Hit
CTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATGTCGCTGGGATAGA3147580.1620923480415908No Hit
CTCCTGTCCAGAAGGCACCACCACAGCCGCCCACTTCTGGAAGGTTCCAT3011420.15508045506052504No Hit
CCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCC2937620.1512799431480496No Hit
CTCTGCTCTTCTCCAGAAGGCACCACCACAGCTGCCCACTTCTGGAAGGT2913090.15001671066548833No Hit
GCCTCTTCTCAGCTCAACCTCCGCCTCTTGGGTTCGGGTAATGATGGTTC2801740.1442824694533726No Hit
CCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTT2713460.13973627444479092No Hit
GGGGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGGGGAA2681010.1380651821472323No Hit
CTCCTGTTCAATCGTTTCTTTGGAAGGCAGTGGATTTTTCTCTTGCGTCT2667800.13738490081438945No Hit
CTTCTTTTCTTCCCCTTCCCCTTCTTTTCAATTTCTCCCACGTCAAGAGA2565640.13212392118053456No Hit
TTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTT2457810.1265709509973066No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2357740.1214176010368538No Hit
CGCCTCTTGGGTTCGGGTGATGATGGTTCCACGTCAGCGGCCCTCCGCCT2260720.11642131830313612No Hit
CTCCTCTCCAGAAGGCACCACCACAGCCGCCCACTTCTGGAAGGTTCCAT2201930.1133937831360029No Hit
CTCCGCCTCTTGGGTTTGCGTGACGGTTCCACATCACCGACCCTCCGCCT2188850.1127201964718406No Hit
CTCCGCCTCTTGGGTTCGGGTAATGATGGTTCCACGTCAGCGGCCCTCCG2099070.10809675528617604No Hit
CGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGG2045320.10532876727404117No Hit
GGAAGGGGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGG2036550.10487713462536354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)