FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008411139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008411139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences157849232
Total Bases11.9 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC2414110.1529377095733985No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA2262730.14334754571374791No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA1841770.1166790599272602No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)