FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008411206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008411206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60557017
Total Bases4.6 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2054660.3392934628863902No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC997000.16463822846491927No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC661450.10922763913552742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)