FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008411223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008411223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62747684
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA809980.1290852424130905No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC738380.11767446269411314No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA697570.11117063699115971No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCG685100.10918331264624843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)