FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008411227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008411227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59413954
Total Bases6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2431950.4093230354606596No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1642550.27645862451773534No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC765300.12880812477149728No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)