FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008411398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008411398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences195245120
Total Bases14.8 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC16988120.8700919131807239No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8915710.4566418868753288No Hit
CTCCTGTTCAATCGTTTCTTTGGAAGGCAGTGGATTTTTCTCTTGCGTCT5428520.2780361424654301No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC5057460.2590313140733044No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG4488280.22987924102789353No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG3911830.2003548155262472No Hit
CTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTT3052920.15636344713762884No Hit
GCCAGATTTTCTCCATGTCGTCCCAGTTGGTGACGATGCCGTGCTCGATG2920980.14960578784248232No Hit
GCCGGCTTCACGCTCAGAAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC2464260.1262136538931165No Hit
CTCTGCTCTTCTCCAGAAGGCACCACCACAGCTGCCCACTTCTGGAAGGT2432440.1245839076541324No Hit
CCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTAACACTCGGGGGGG2215260.11346045422287636No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA2054220.10521236074940055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)