FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008411454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008411454
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55960891
Total Bases4.2 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA848550.15163268218870926No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCG832160.14870385105197842No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG670820.11987300202207288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)