FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008411645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008411645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences157717329
Total Bases11.9 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC8148390.5166451937567368No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG3881680.24611626538514356No Hit
GGCGGACTTTGGAGTGGGAAGCGGGGAATGTCTACGTGCGTATGCACGTG3776400.23944103187291485No Hit
CCTGAACATGCCCTGTTCCTACTCTCTCACTCCAGTTACCACAATTTCTC3200030.20289653776726083No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC2297870.14569546761725846No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG2139140.13563125964427156No Hit
CCCAGCTTTATTTCCAACGTTGTGGAAAGGGACTTGTACATCATGGGGCA2079990.1318808791137973No Hit
CCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGT1929490.12233849078182144No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1862160.11806946083901788No Hit
GTGGGTTTTCACAGCTTCGCCATTCTGGCGGGTCCAGGAGATGGTCACGC1774540.11251395209717252No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)