FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008411666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008411666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73388108
Total Bases5.5 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA8346711.1373382183391347No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC898460.1224258295363058No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG845240.11517397341814563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)