FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008411725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008411725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123535510
Total Bases9.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA3661150.29636417901217227No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA2981750.24136784637874567No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG2797000.2264126322868623No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC2451550.1984490127575464No Hit
CCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTT1676170.13568325415097246No Hit
GTAGCGTTTTGTCCTGAGCGTGAAGCCGGCTTTCTGGCGTTGCTTGGCTG1572180.12726543161557352No Hit
CTCTGTTCCTCCCCTTTCCGCCTAGGGGAAAGTCCCCGGACCTCGGGCAG1498410.12129386926884424No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCG1324790.10723961069978988No Hit
GAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTA1245440.10081635636587406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)