FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008411729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008411729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences205655876
Total Bases15.6 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC3927290.19096415217428556No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG3209840.156078205127482No Hit
CCTGAACATGCCCTGTTCCTACTCTCTCACTCCAGTTACCACAATTTCTC2545960.12379709491014008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)