FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008411767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008411767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences208662807
Total Bases15.8 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA4130520.19795190428929677No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA2918540.1398687213097828No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)