FastQCFastQC Report
Wed 29 May 2024
EGAF00008431276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008431276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8199038
Total Bases614.9 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCAAGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTCGAAGAT95670.11668442078204785RNA PCR Primer, Index 47 (100% over 41bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)