FastQCFastQC Report
Wed 29 May 2024
EGAF00008433527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008433527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67189433
Total Bases9.7 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN6043710.8995030513205848No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA825180.12281395498604669No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT752620.11201463777793749No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT748100.11134191294634084No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)