FastQCFastQC Report
Wed 29 May 2024
EGAF00008435363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008435363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124339582
Total Bases17.8 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN15639671.2578190909472415No Hit
CCCACACCCCCGCCGCCGCCGCCGCCGCCGCCCTCCGACGCACACCACAC3247410.2611726650327649No Hit
CCTGCGGCGGCCTCCACCCGGGCCCGCGCCCTAGGCTTCAAGGCTCACCG2286470.18388914963539124No Hit
CCACACACGACCGGTCGGAGGCAGAACGGCAGCCCCTCGGCGGCCGGCCG2159880.17370815996470054No Hit
GGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAGG2104550.1692582495572488No Hit
GCGGAGGCGACGGGAATCCGGCCGGCCCCGAAGACGGGGAGCCGGCGCGG1941180.156119231605588No Hit
GCGGGAAGGCCGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCG1820010.14637414496053236No Hit
CAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGCACGCCT1588390.12774612673219377No Hit
CCGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGG1570220.12628480607245407No Hit
CCGACGTCGCCGCCGACCCCGTGCGCTCGCTCCGCCGTCCCCCTCTTCGG1505200.12105557826308279No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1468080.11807020551186992No Hit
CGGTCCCGCCGCCCCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCGCCC1452660.11683005336144688No Hit
GCCGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCG1394580.11215897444467844No Hit
GGCAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGCACGC1378900.11089791181701093No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG1376010.11066548381994722No Hit
GTCACACTCCCCCCACCCGCCAGCCGCTCCTCCTCGGGCCCGCAGAGGCG1367900.11001323777974417No Hit
CGAGGAAACACCTGCGCGCGGCCACCTCGAGCGTTCGCGTTCAGGGCGGG1343170.10802432969414356No Hit
GGGGGCCGCCCGCAAGTCGACAACCACTGGAGGCGACAGCGAGGGCTGTC1343010.10801146170814697No Hit
CCCGAACCCACCGCGATCGCTCACACGGCCCGCGCGCACCCGCCAGAGGG1324220.1065002776026704No Hit
GGAGGGACCACCGGGCCGCGCTCGGGCGCACGCGCGCGCCGAACGGGGCG1315440.10579414687110658No Hit
GGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAG1246260.10023035142582351No Hit
CTCGTCTCACTCAAACCGCCTCGAACCCCACACCGACGAGCTCCCTCAGG1243870.10003813588499919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)