FastQCFastQC Report
Wed 29 May 2024
EGAF00008435763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008435763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80398475
Total Bases12 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT1060860.13195026398199716No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA926300.11521362811919007No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA898980.11181555371541563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)