FastQCFastQC Report
Wed 29 May 2024
EGAF00008436254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008436254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109563280
Total Bases15.6 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT2015700.18397587220828No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG1110640.10136972898219185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)