FastQCFastQC Report
Wed 29 May 2024
EGAF00008436377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008436377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99632349
Total Bases14.4 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN5415310.5435292908731881No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1896370.1903367750568643No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1372830.1377895847863629No Hit
CCCACACCCCCGCCGCCGCCGCCGCCGCCGCCCTCCGACGCACACCACAC1091770.109579871493344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)