FastQCFastQC Report
Wed 29 May 2024
EGAF00008436386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008436386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124488284
Total Bases18.1 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN6701810.5383486529543615No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2680530.21532387738592332No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG2406960.19334831541255723No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1699290.1365020020679215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)