FastQCFastQC Report
Wed 24 Jul 2024
EGAF00008437360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008437360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46239
Total Bases5.7 Mbp
Sequences flagged as poor quality0
Sequence length50-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTATACGTATGTTTGTGGGTGCCCTTTTTCCCATCTCATAACTTGTTT2630.5687839269880404No Hit
GTACAGGGTTATGTCAAAAAGTTAATTTAGGCACATCCTAGACAAGAGTT1730.3741430394255931No Hit
GTATACGTATGTTTGTGGGTGCCCTTTTTCCCATCTCATAACTTGTTTTA1710.3698176863686498No Hit
GTGCAGAGATACATCACAATGTGCCTGTAGGCAGAGCCTTGATGAGAGGT1370.29628668440061423No Hit
ATTATATACATAATGTATACGTATGTTTGTGGGTGCCCTTTTTCCCATCT1270.2746599191158978No Hit
TCTCTGCACTGATCACCTAGGTCTTGTAGCTATTTTCTAGGATCTGCCTA1110.24005709466035163No Hit
ATACGTATGTTTGTGGGTGCCCTTTTTCCCATCTCATAACTTGTTTTAAG890.19247821103397567No Hit
GTTTGTGGGTGCCCTTTTTCCCATCTCATAACTTGTTTTAAGAAGCGCAG840.18166482839161746No Hit
GTATGTTTGTGGGTGCCCTTTTTCCCATCTCATAACTTGTTTTAAGAAGC810.17517679880620257No Hit
CTTTTACATAGACCGAAAGGTCATTGAAGGCTCAGAGTTTTGTTTCAAGA770.16652609269231602No Hit
GTATGAATATACCTTCAAAGCAGCAACACAGGTTCCCCATGAGAAAAAGC680.14706200393607127No Hit
GCCTACAGGGGCATTGCAATGTATCTCTGCACTGATCACCTAGGTCTTGT660.142736650879128No Hit
GTGCAGAGATATGTGACAAGGCCCCTTGAAGCAGAGCCTAGACAATACTT630.1362486212937131No Hit
GTATATTATTATATACATAATGTATACGTATGTTTGTGGGTGCCCTTTTT590.12759791517982655No Hit
GCACAGACAGTGGTCCTTAGGACGAAGAGCAGGAGACCCCTAATTCCGTC590.12759791517982655No Hit
TCACTGCACTGATCACCCAGGCGATATAACTCTTCTCTAGGATCTGACCA580.12543523865135492No Hit
TACATAATGTATACGTATGTTTGTGGGTGCCCTTTTTCCCATCTCATAAC570.12327256212288328No Hit
TCCCTGCAATGATCACCCAGGTGATATACCACTTGCCAAGGCTCTGCCTA550.11894720906594002No Hit
ACCCTGTACTGATCATCCAGGTGATGGAGCTTTTGTCTAGGCTCTGCCTA540.11678453253746836No Hit
GTGCATAGATATGTCACAATATGCCCTGGAAGCAGAGCCTAGACAAGAGT540.11678453253746836No Hit
GTGCAGAGATTTCTCACAATGCCCCCATAGGCAGATCCGAGAGAAGAGTT540.11678453253746836No Hit
TCCTAGACAAGAGTTACATCACTTGGATGATTAGTGCAGAGATATGTCAC510.11029650295205347No Hit
GCCTAATAACGTGTGGGCTTGGGATTCAGTTCTTGAAACAAAACTCTGAG510.11029650295205347No Hit
GGCATAAACATTGCTGGGTGAGGGCACAATCCACATTGTGAGGTCCAACT510.11029650295205347No Hit
GGTGATATACCACTTGCCAAGGCTCTGCCTACAGGGGCATTGCAATGTAT490.10597114989511018No Hit
TCTCTGCACTAATCATCCAAGTGATGTAACTCTTGTCTAGGATGTGCCTA490.10597114989511018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)