FastQCFastQC Report
Wed 24 Jul 2024
EGAF00008437404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008437404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences138788
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length50-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTATACGTATGTTTGTGGGTGCCCTTTTTCCCATCTCATAACTTGTTT1590.11456321872207972No Hit
GTATGAATATACCTTCAAAGCAGCAACACAGGTTCCCCATGAGAAAAAGC1460.10519641467562037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)