FastQCFastQC Report
Wed 24 Jul 2024
EGAF00008437429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008437429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23253
Total Bases3.2 Mbp
Sequences flagged as poor quality0
Sequence length50-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTATACGTATGTTTGTGGGTGCCCTTTTTCCCATCTCATAACTTGTTT570.24512966068894337No Hit
GTACAGGGTTATGTCAAAAAGTTAATTTAGGCACATCCTAGACAAGAGTT460.19782393669634024No Hit
GTATACGTATGTTTGTGGGTGCCCTTTTTCCCATCTCATAACTTGTTTTA430.1849223756074485No Hit
GTGCAGAGATATGTCACAAAGCTCCTTTAGGCCGAACTTAGATGTGTTAC370.159119253429665No Hit
ATTATATACATAATGTATACGTATGTTTGTGGGTGCCCTTTTTCCCATCT320.1376166516148454No Hit
GTGCAGAGATACATCACAATGTGCCTGTAGGCAGAGCCTTGATGAGAGGT290.12471509052595364No Hit
TCTCTGCACTGATCACCTAGGTCTTGTAGCTATTTTCTAGGATCTGCCTA270.11611404980002579No Hit
GTGCATAGATATGTCACAATATGCCCTGGAAGCAGAGCCTAGACAAGAGT240.10321248871113405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)