FastQCFastQC Report
Wed 24 Jul 2024
EGAF00008437446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008437446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68090
Total Bases9.4 Mbp
Sequences flagged as poor quality0
Sequence length50-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACAGGGTTATGTCAAAAAGTTAATTTAGGCACATCCTAGACAAGAGTT2790.4097517990894405No Hit
ATGTATACGTATGTTTGTGGGTGCCCTTTTTCCCATCTCATAACTTGTTT2660.39065942135409015No Hit
GTATACGTATGTTTGTGGGTGCCCTTTTTCCCATCTCATAACTTGTTTTA1600.2349831105889264No Hit
GTGCAGAGATACATCACAATGTGCCTGTAGGCAGAGCCTTGATGAGAGGT1440.21148479953003377No Hit
GTGCAGAGATATGTCACAAAGCTCCTTTAGGCCGAACTTAGATGTGTTAC1440.21148479953003377No Hit
TCTCTGCACTGATCACCTAGGTCTTGTAGCTATTTTCTAGGATCTGCCTA1430.210016155088853No Hit
GTGCATAGATATGTCACAATATGCCCTGGAAGCAGAGCCTAGACAAGAGT1280.18798648847114113No Hit
ATTATATACATAATGTATACGTATGTTTGTGGGTGCCCTTTTTCCCATCT1270.18651784402996036No Hit
GTATGAATATACCTTCAAAGCAGCAACACAGGTTCCCCATGAGAAAAAGC1190.17476868850051402No Hit
ACCCTGTACTGATCATCCAGGTGATGGAGCTTTTGTCTAGGCTCTGCCTA1120.1644881774122485No Hit
TCCCTGCAATGATCACCCAGGTGATATACCACTTGCCAAGGCTCTGCCTA1090.16008224408870614No Hit
ATACGTATGTTTGTGGGTGCCCTTTTTCCCATCTCATAACTTGTTTTAAG890.1307093552650903No Hit
TCTCTGCACTGATCTCCCAGGTGCTGTAACTTTAGTCTAGGCTCTGGCTA890.1307093552650903No Hit
GTATGTTTGTGGGTGCCCTTTTTCCCATCTCATAACTTGTTTTAAGAAGC840.12336613305918637No Hit
GTGCAAAGGTATGTCACAAAGCCCCCTGTACGCAAAGCCTAGACAATGGT830.12189748861800559No Hit
GTACAGGGTTATGTCAAAAAGTTAATTTAGGCACATCCTAGACAAGTGTT760.11161697752974005No Hit
GGTGATATACCACTTGCCAAGGCTCTGCCTACAGGGGCATTGCAATGTAT750.11014833308855927No Hit
GTTTGTGGGTGCCCTTTTTCCCATCTCATAACTTGTTTTAAGAAGCGCAG730.10721104420619769No Hit
TGTCTAGGATGTGCCTAAATTAACTTTTTGACATAACCCTGTACTGATCA710.10427375532383609No Hit
TCTCTGCACTGATCACCTAGGTCATGTAACTTTTTTCTAGGCTCTACCTA710.10427375532383609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)