FastQCFastQC Report
Wed 29 May 2024
EGAF00008456891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008456891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences284862339
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTACGAGTCAACAGG3682490.1292726168340561No Hit
TTGGTCCTCGGATAGG3305370.11603394157344189No Hit
AAGGAGCAGCTCCGGT3251920.11415759666285685No Hit
GGAACTTCAATTAGGA3167670.11120002774392722No Hit
TGCCTGTAGAGACTCG3145770.11043123534838349No Hit
CGCGCAACACGTTACA3082770.10821964078586042No Hit
TAAACCGAGGGTGTTG2995120.10514271596990574No Hit
GCCCGAATCGTTCCGT2976900.10450310878055383No Hit
TATCTGTAGTAGGAAG2942420.10329269956601739No Hit
CGCTAGGTCAAGGCCC2935550.10305153044467559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)