FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008459002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008459002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18443819
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTTAGCGTCGAGCCGATACCAGAATGGAGATCGGAAGAGCGACGAGT721880.3913939949204663No Hit
AAGTTTAGCGTCGAGCCGATACCAGAATGGATATCGGAAGAGCGACGAGT418920.22713300320286162No Hit
AAGTTTAGCGTCGAGCCGATACCAGAATGGAGATCGGAAGATCGTCGTCT381720.20696364456840527No Hit
AAGTTTAGCGTCGAGCCGATACCAGAATGGAGATCGGAAGATCGTCGTGT305100.165421272026146No Hit
AAGTTTAGCGTCGAGCCGATACCAGAATGGAGATCGGAAGATCGTCGACT297270.16117594734582896No Hit
AAGTTTAGCGTCGAGCCGATACCAGAATGGAGATCGGAACATCGTCGTCT259740.14082766698155083No Hit
AAGTTTAGCGTCGAGCCGATACCAGAATGGAGATCGGAACATCGTCGACT252180.13672873280745163No Hit
AAGTTTAGCGTCGAGCCGATACCAGAATGGAGATCGGAAGAGCGTCGAGT239470.12983753527401237No Hit
AAGTTTAGCGTCGAGCCGATACCAGAATGGAAATCGGAAGAGCGACGAGT221020.11983418401579411No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)