FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008459404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008459404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26255216
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGACGTAATTTCGCGGAGCGCTTAGCTCAAGATCGGAAGAGCGACGAGT690560.2630182132190419No Hit
AGGACGTAATTTCGCGGAGCGCTTAGCTCAAGATCGGAAGAGCGTCGAGT437570.16666021715456464No Hit
AGGACGTAATTTCGCGGAGCGCTTAGCTCAAGATCGGAAGATCGACGAGT320820.1221928625534827No Hit
AGGACGTAATTTCGCGGAGCGCTTAGCTCAAGATCGGAAGATCGTCGACT303110.11544753621528005No Hit
AGGACGTAATTTCGCGGAGCGCTTAGCTCAAGATCGGAAGATCGTCGAGT299670.11413732037093124No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)