FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008459715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008459715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19269748
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCGTCGGCTCTGTTTCTAATGGCTAGTCAGATCGGAAGAGCGTCGAGT310320.161039988691082No Hit
ACCATGACTTACATGGAACCTTAGAGGGCCAGATCGGAAGAGCGTCGAGT273870.14212432876652045No Hit
ATTCGTCGGCTCTGTTTCTAATGGCTAGTCAGATCGGAAGATCGTCGAGT216250.11222253658947692No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)