FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008485111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008485111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21241508
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGTCGACTATCTCGTAT493260.2322151515796336TruSeq Adapter, Index 4 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGTCGACTATCGCGTAT354560.16691846925368953TruSeq Adapter, Index 4 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)