FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115106693
Total Bases8.6 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2271920.19737514307704068No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2117300.1839423881285513No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1701890.14785326166915422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)