FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83914055
Total Bases6.6 Gbp
Sequences flagged as poor quality0
Sequence length79
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC2085350.2485102167926458No Hit
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGG1160240.1382652762996616No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC1003220.11955327388242648No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGC972300.11586855146018149No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)