FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122461821
Total Bases9.1 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA3034110.24775966707207467No Hit
CTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAAT2113200.17255990338409227No Hit
CTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTCAACAAGTACCG1923130.15703914773568492No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)