FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83901616
Total Bases6.5 Gbp
Sequences flagged as poor quality0
Sequence length75-79
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGG2098690.250137017623117No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC1070650.12760779244108958No Hit
GTTTGGGAGCCGCGGAGGCGGCCGCGCCGAGCCGGGCCCGTGGCCCGCCG1070440.127582763125802No Hit
GTCCGCTCCGGGCCGGGACGGGGTCCGGGGAGCGTGGTTTGGGAGCCGCG1066230.12708098494789422No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA847290.10098613595237546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)