FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91608708
Total Bases7.1 Gbp
Sequences flagged as poor quality0
Sequence length75-79
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGG2433640.26565596798941865No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC1393900.15215802410399676No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1193890.13032494683802331No Hit
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC962720.10509044620517953No Hit
GTCCCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCG919670.1003911112904245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)