FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82765614
Total Bases6.5 Gbp
Sequences flagged as poor quality0
Sequence length75-79
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGG2812600.33982711709237123No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1336060.16142694235313715No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC1092130.1319545578433092No Hit
GTCCCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCG961250.1161412274425947No Hit
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC899400.10866831725552112No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)