FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81337219
Total Bases6.5 Gbp
Sequences flagged as poor quality0
Sequence length80
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC1535210.18874631059121902No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1395270.17154139484409958No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC1074800.13214122799059555No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGC930230.11436707714336779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)