FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81687880
Total Bases6.5 Gbp
Sequences flagged as poor quality0
Sequence length75-80
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAGTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCT1440820.1763811228789387No Hit
AGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAGAAGGCTTCCA1084530.132765105423228No Hit
GTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACGAGGAGACGCCGGCG1071880.1312165280822565No Hit
GTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTC1054220.12905464066395161No Hit
GCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAA1040060.12732121337951235No Hit
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCC913950.11188318267042797No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)