FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96835050
Total Bases7.7 Gbp
Sequences flagged as poor quality0
Sequence length80
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2871390.29652383098888263No Hit
CCTACGGAAACCTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCG1129520.11664371526632143No Hit
CCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTTTACTTCCTCT1110110.11463927575810619No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)