FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80675553
Total Bases6.4 Gbp
Sequences flagged as poor quality0
Sequence length80
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC2686370.33298439243422356TruSeq Adapter, Index 3 (100% over 50bp)
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGG1445470.1791707582097392No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCG1033900.12815530375106324No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)