FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87296462
Total Bases6.9 Gbp
Sequences flagged as poor quality0
Sequence length80
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC2338540.26788485425675096No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGC1345270.15410361075114362No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1307220.14974490031451676No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC1231770.14110193835805165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)