FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109960023
Total Bases8.7 Gbp
Sequences flagged as poor quality0
Sequence length80
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1515060.1377828013004326No Hit
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC1338300.12170786832229018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)