FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86168552
Total Bases6.8 Gbp
Sequences flagged as poor quality0
Sequence length80
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGC1911660.22185123872105914TruSeq Adapter, Index 10 (100% over 50bp)
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCG1687710.19586147855890626No Hit
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGG1283100.14890583283794764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)