FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81687880
Total Bases6.5 Gbp
Sequences flagged as poor quality0
Sequence length75-80
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC2473110.30275115476126935No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC1770910.21678981018971236No Hit
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA1271450.15564732491527508No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGC1216070.14886786142570965No Hit
CGGAAACCTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCG1098270.1344471174916034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)