FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90925592
Total Bases7.2 Gbp
Sequences flagged as poor quality0
Sequence length80
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3777300.4154275949063933No Hit
AGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATC1002560.11026158619896587No Hit
GGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCA995670.10950382374194495No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)