FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69431968
Total Bases10.4 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTAT3136280.45170547376678133TruSeq Adapter, Index 27 (97% over 39bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1151670.16587028038727059No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)